soprano.scripts

soprano.scripts#

Modules

cli

Click command line interface for Soprano.

cli_utils

A collection of functions and options for the command line interface for soprano.

dipolar

CLI to plot the extract and summarise dipolar couplings.

extract_nmr

A script to extract NMR properties from a (list of) .magres files

molecules

CLI to extract all molecules in a molecular crystal (in any ASE-readable format) and output the in individual structure files.

msaverage

A script to compute averages of NMR tensors over CH3 and NH3 groups

nmr

CLI to extract and process NMR-related properties from .magres files.

nmr_plot

CLI to plot NMR results from .magres file(s). TODOs: - [ ] add stylesheets - [ ] add dipolar/j-coupling scaling of markers - [ ] Basic version done, but maybe check the assumptions made when running with the reduce or average groups options... - [ ] 1D plots -- basic simulation of 1D NMR?.

phylogen

A script that allows to run a phylogenetic analysis as a command-line tool

vasp2cell

A very simple script to convert from all ASE-accepted formats to CASTEP's .cell format

view

CLI wrapper around the ASE GUI to view structures.